PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 197aa    MW: 22436.4 Da    PI: 5.0372
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.89.3e-44241231100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp +qp+kf  vh++FGasn++k+l+++pe++r da+ss+vyeA ar+rdPvyG++g+i +lq+q+++l+++la
  XP_004487250.1  24 PCAACKFLRRRCAEKCVLAPYFPPTQPAKFTTVHRVFGASNIIKILQEIPESQRADAVSSMVYEASARIRDPVYGCAGTICHLQKQINELQEQLA 118
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_004487250.1 119 KTQAE 123
                     *9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.86123124IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-4424121IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MESDKITNIF SQYSSTSPQV VMSPCAACKF LRRRCAEKCV LAPYFPPTQP AKFTTVHRVF  60
GASNIIKILQ EIPESQRADA VSSMVYEASA RIRDPVYGCA GTICHLQKQI NELQEQLAKT  120
QAEIINKQFE QANLMTLICN MEMEETPQES PQQSFDNFIS SPSHNSDYHN NLNFFEENNI  180
GLISSWEPLW TFKINEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487250.11e-147PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK088e-77LBD11_ARATH; LOB domain-containing protein 11
TrEMBLK7M3861e-105K7M386_SOYBN; Uncharacterized protein
STRINGGLYMA13G40370.21e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.15e-78LOB domain-containing protein 11